diff --git a/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java b/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java
index 1deb92e3fe..7db159bc98 100644
--- a/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java
+++ b/spring-boot-project/spring-boot-autoconfigure/src/main/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfiguration.java
@@ -301,7 +301,7 @@ public class FlywayAutoConfiguration {
 
 	/**
 	 * Additional configuration to ensure that {@link EntityManagerFactory} beans depend
-	 * on the {@code flyway} bean.
+	 * on any {@link Flyway} beans.
 	 */
 	@Configuration(proxyBeanMethods = false)
 	@ConditionalOnClass(LocalContainerEntityManagerFactoryBean.class)
@@ -309,14 +309,14 @@ public class FlywayAutoConfiguration {
 	protected static class FlywayJpaDependencyConfiguration extends EntityManagerFactoryDependsOnPostProcessor {
 
 		public FlywayJpaDependencyConfiguration() {
-			super("flyway");
+			super(Flyway.class);
 		}
 
 	}
 
 	/**
-	 * Additional configuration to ensure that {@link JdbcOperations} beans depend on the
-	 * {@code flyway} bean.
+	 * Additional configuration to ensure that {@link JdbcOperations} beans depend on any
+	 * {@link Flyway} beans.
 	 */
 	@Configuration(proxyBeanMethods = false)
 	@ConditionalOnClass(JdbcOperations.class)
@@ -324,14 +324,14 @@ public class FlywayAutoConfiguration {
 	protected static class FlywayJdbcOperationsDependencyConfiguration extends JdbcOperationsDependsOnPostProcessor {
 
 		public FlywayJdbcOperationsDependencyConfiguration() {
-			super("flyway");
+			super(Flyway.class);
 		}
 
 	}
 
 	/**
 	 * Additional configuration to ensure that {@link NamedParameterJdbcOperations} beans
-	 * depend on the {@code flyway} bean.
+	 * depend on any {@link Flyway} beans.
 	 */
 	@Configuration(proxyBeanMethods = false)
 	@ConditionalOnClass(NamedParameterJdbcOperations.class)
@@ -340,7 +340,7 @@ public class FlywayAutoConfiguration {
 			extends NamedParameterJdbcOperationsDependsOnPostProcessor {
 
 		public FlywayNamedParameterJdbcOperationsDependencyConfiguration() {
-			super("flyway");
+			super(Flyway.class);
 		}
 
 	}
diff --git a/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfigurationTests.java b/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfigurationTests.java
index 9814ae364b..de2afb08ea 100644
--- a/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfigurationTests.java
+++ b/spring-boot-project/spring-boot-autoconfigure/src/test/java/org/springframework/boot/autoconfigure/flyway/FlywayAutoConfigurationTests.java
@@ -49,6 +49,10 @@ import org.springframework.core.Ordered;
 import org.springframework.core.annotation.Order;
 import org.springframework.core.io.DefaultResourceLoader;
 import org.springframework.core.io.ResourceLoader;
+import org.springframework.jdbc.core.JdbcOperations;
+import org.springframework.jdbc.core.JdbcTemplate;
+import org.springframework.jdbc.core.namedparam.NamedParameterJdbcOperations;
+import org.springframework.jdbc.core.namedparam.NamedParameterJdbcTemplate;
 import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
 import org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter;
 import org.springframework.stereotype.Component;
@@ -293,6 +297,13 @@ class FlywayAutoConfigurationTests {
 				.run((context) -> assertThat(context).hasNotFailed());
 	}
 
+	@Test
+	void customFlywayWithJdbc() {
+		this.contextRunner
+				.withUserConfiguration(EmbeddedDataSourceConfiguration.class, CustomFlywayWithJdbcConfiguration.class)
+				.run((context) -> assertThat(context).hasNotFailed());
+	}
+
 	@Test
 	void overrideBaselineVersionString() {
 		this.contextRunner.withUserConfiguration(EmbeddedDataSourceConfiguration.class)
@@ -530,7 +541,7 @@ class FlywayAutoConfigurationTests {
 		}
 
 		@Bean
-		Flyway flyway() {
+		Flyway customFlyway() {
 			return Flyway.configure().load();
 		}
 
@@ -545,6 +556,32 @@ class FlywayAutoConfigurationTests {
 
 	}
 
+	@Configuration
+	static class CustomFlywayWithJdbcConfiguration {
+
+		private final DataSource dataSource;
+
+		protected CustomFlywayWithJdbcConfiguration(DataSource dataSource) {
+			this.dataSource = dataSource;
+		}
+
+		@Bean
+		Flyway customFlyway() {
+			return Flyway.configure().load();
+		}
+
+		@Bean
+		JdbcOperations jdbcOperations() {
+			return new JdbcTemplate(this.dataSource);
+		}
+
+		@Bean
+		NamedParameterJdbcOperations namedParameterJdbcOperations() {
+			return new NamedParameterJdbcTemplate(this.dataSource);
+		}
+
+	}
+
 	@Component
 	static class MockFlywayMigrationStrategy implements FlywayMigrationStrategy {