Closes gh-5971

Closes gh-5956

Closes gh-6160

Closes gh-6165

In fact the folder was already created if the app is running as
a different user, but not if running as the current user, so it
was just a question of moving one line out of an if block.

Fixes gh-5986

* 1.3.x-liquibase-endpoint:
  Close connection after use in LiquibaseEndpoint

Update LiquibaseEndpoint so that connections are closed and returned to
the pool after use.

Fixes gh-6118

Update SpringApplicationBuilder so that properties of the form
`abc=d:e:f` are correctly parsed. Prior to this commit the `:` delimiter
would always be chosen over `=`, even if `=` occurred first.

Fixes gh-6121

Update TypeUtils to guard against the use of older Java versions.
Both `Collection` and `Map` type lookups now fallback to generic free
versions of the classes.

Prior to this commit using `xmlbeans-maven-plugin` in combination with
Spring Boot's annotation processor could result in
`IllegalArgumentException: Incorrect number of type arguments`.

Fixes gh-6122

Update BeanDefinitionLoader to support loading from package names that
do not contain dots.

Prior to this commit `new BeanDefinitionLoader(registry, "somepackage")`
would fail because "somepackage" exists and is a resource but does not
contain valid XML. Somewhat surprisingly the InputStream returned by
the resource actually contains the listing of files in the package.

Fixes gh-6126

Update BasicJsonParser to fix potential exceptions if strings happen
to be empty.

Fixes gh-6136

* pr/6125:
  Update DataSourceBuilder aliases

This commit adds a `user` alias for the `username` property which permits
the use of `OracleDataSource`.

Closes gh-6124, gh-6027, gh-6125

Closes gh-6105

* gh-6056:
  Check factory method metadata to avoid NPE in devtools condition

Closes gh-6056

- Limit shared state between FileSystemWatcher and the watching thread
- Use a private monitor rather than synchronizing on this
- Use a Runnable implementation rather than subclassing Thread
- Synchronize consistently when reading and writing state

Closes gh-6039

Previously, JarURLConnection didn't override getPermission(). This
meant that it required all permissions. This was at odds with the
Oracle JVM's concrete sun.net.www.protocol.jar.JarURLConnection which
overrides getPermission to return a FilePermission with the read
action for the path of the underlying jar.

This commit updates our JarURLConnection to align its behaviour with
sun.net.www.protocol.jar.JarURLConnection.

Closes gh-5411

This reverts commit 66e093ed. There's
a regression [1] in Tomcat 8.0.35 that causes it to throw an NPE when
it scans a jar file without a manifest. It's already been fixed [2].

See gh-6087

[1] https://svn.apache.org/viewvc/tomcat/tc8.0.x/trunk/java/org/apache/tomcat/util/scan/StandardJarScanner.java?annotate=1742274#l369
[2] https://svn.apache.org/viewvc/tomcat/tc8.0.x/trunk/java/org/apache/tomcat/util/scan/StandardJarScanner.java?annotate=1744197#l369

Closes gh-6090

Closes gh-6089

Closes gh-6088

Closes gh-6087

Closes gh-6086

Closes gh-6085

Closes gh-6033

The list of changes is written to on one thread and read from on
another. Without some form of sychronization this is not thread-safe.

This commit makes changes a synchronized list which should guarantee
that the reading thread can see the changes made by the writing thread.
It also removes a redundant call to clear the list of changes at the
start of waitsForPollingInterval.

See gh-6038

Closes gh-6036

Neither Cassandra nor Elasticsearch starts reliably on Windows. This
commit adds a custom class rule to the associated sample application
tests to skip them on Windows. A class rule is used rather than a
Unit assumption as we want to avoid starting Elasticsearch (done by
the application context) and Cassandra (done by a test execution
listener) and an assumption would be too late.

Closes gh-5949

Closes gh-5947

Closes gh-5946

Closes gh-5945

Previously, arguments passed to the script were handled in one way
if a service was being started using start-stop-daemon and in another
way if start-stop-daemon wasn’t available or the application is being
launched in run mode. This meant that quoted arguments were only 
handled correctly when the application was being started using
start-stop-daemon.

This commit updates the launch script so that argument handling is
the same across all three different way that the application can be
launched.

Closes gh-5942

Using a separate thread to call the application's main method is
unnecessary – the context class loader of the current thread can be
updated instead – and makes exception and exit code handling more
complicated than it needs to be.

This commit updates the Launcher so that it calls the main method
runner using the current (main) thread. As a result, any exception
that's thrown will be caught by the JVM and result in a non-zero exit
code being returned from the process.

Closes gh-5922

* gh-5884:
  Add tests for JooqExceptionTranslator
  Use JOOQ's Spring DB name during exception translation