Fixes gh-198

Instead of adding active prpfiles for every one we encounter, we need to
build up a complete "default" Environment and then ask it what the active
profiles are. Implemented in ConfigFileApplicationListener.

Fixes gh-198

Previously, there were two <manifestEntries> elements in the CLI's
pom.xml. With certain versions of Maven, this appeared to cause the
first element to be ignored in favour of the second. The problem did
not occur when built locally with Maven 3.1.1, but did occur when built
by Bamboo which, I believe, uses 3.0.x

This commit combines the two <manifestEntries> into one.

The test passes locally, both in Eclipse and on the command line, but
fails on the CI server. Revert the addition of the test while I
hopefully figure out why.

This reverts commit 2e81b1d0.

The grab command downloads the dependencies of one or more Groovy
scripts to ./repository. This commit ensures that those previously
downloaded dependencies can be used by a subsequent invocation of the
run command.

The location and behaviour of the local cache is unaffected by this
change. If the dependencies in ./repository do not exist in the local
cache, Aether will "download" them from ./repository and store them in
the local cache.

Fixes #191

Previously, Aether's configuration was largely hard-coded making it
impossible to configure a mirror, provide credentials for accessing
a repository, etc.

This commit adds support for configuring Aether via Maven's
settings.xml file. The support is optional and must be enabled by
grabbing spring-boot-maven-settings in an init script. The Aether
instance that's used when running the application will then be
configured using settings.xml. The settings file is expected to be
found in ${user.home}/.m2/settings.xml.

The configuration of the following items is currently supported:

 - Offline
 - Proxies
 - Mirrors
 - Server authentication
 - Local repository location

If the support is not enabled, settings.xml does not exist, or
settings.xml does not configure certain things then sensible defaults
are applied.

When an init command is run, it may add entries to the classpath. This
commit adds a test that verifies that, if an entry that is added to
the classpath contains a CompilerAutoConfiguration file in
META-INF/services, then the CompilerAutoConfigurations declared in it
are found by subsequent ServiceLoader.load calls.

Also logs a warning about the fact that locks may not be taken when
starting a Job. JPA and Batch don't really work that well together
in general so it's probably not worth a lot of effort to work aoround
this. If anyone needs to they should create a custom JpaDialect
(and a BatchConfigurer).

Fixes gh-197

Fixes gh-195

Previous fix for handling wildcard entries in a classpath
imposed a new problem in a case where entry is a directory
with a jar files but also contains a lot of nested directories.

For example entry "./*" resulted for scanning whole disk starting
from "/". In case of default hadoop classpath, it scanned everything
under hadoop's installation. On some cases this deep scan was hidden
and was revealed by NPE's for file access exceptions.

When we want to support wildcard entries we only want to get
jar files from that directory, while boot itself have a need
to travel recursively to find classfiles from an expoded archive.

We handle this case by using recursive(true by default) flag in
ExplodedArchive and this flag is set to false in PropertiesLauncher
if we match wildcard.

Previously, a transform was used to add @GrabResolver annotations
during compilation that added the Spring milestone and snapshot
repositories. This functionality is now handled by
RepositoryConfigurationFactory so the transform is no longer required.

Fix the following issues that were introduced in commit 0610378d:

- Formatting of code including imports
- Improve hashcode/equals implementations by using ObjectUtils
- Provide hashcode/equals for ConditionOutcome
- Use LinkedHashSet in ConditionAndOutcomes to maintain insert order

Fixed gh-127

Fixes gh-143

Users can declare or Command, OptionHandler classes in an init script
or they can use a DSL, e.g.

command("foo") { args -> println "Do stuff with ${args} array" }

or

command("foo") {
  options { option "bar", "Help text for bar option" ithOptionArg() ofType Integer }
  run { options -> println "Do stuff with ${options.valueOf('bar')}" }
}

InitCommand runs on creation of SpringCli so it can search for additional
Commands in updated classpath. Also added as interactive command in Shell
session.

PropertiesLauncher now supports creating its own class loader
from looader.classLoader property. It will succeed if the
implementation specified has a default constructor or one
that takes a parent class loader, or one that takes a URL[]
and a parent class loader (like URLClassLoader).

The collection of outcomes is a list. Sometimes a race condition causes to instances
of the same outcome to get added to the list shown in the report. By replacing this
with a set and propery equals/hashCode, duplicates are prevented from appearing
in the report.

I added test cases to prove that that POJO is properly managed inside a Set and also
to show that duplicates don't appear in the final report.

Autoconfiguration ordering has to be adjusted so that a DataSource is
available before an EntityManagerFactory is ever needed. Previously
the autoconfigs were accidentally loaded in the right order, but after
the change to BatchAutoConfiguration the order has to be explicit.

Fixes gh-189